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Control verbosity, like Scanpy

Status: Open.

#1141 In scverse/squidpy;

· alam-shahul opened on Mar 12, 2026

replace manual variable checks with wrapper functions across codebase

Status: Open.

#1137 In scverse/squidpy;

· timtreis opened on Mar 3, 2026

rename functions in private modules to not have underscore for better IDE detection

Status: Open.

#1136 In scverse/squidpy;

· timtreis opened on Mar 3, 2026

ligrec does seed + worker_id antipattern

Status: Open.

#1131 In scverse/squidpy;

· selmanozleyen opened on Mar 2, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#1128 In scverse/squidpy;

· scverse-bot opened on Feb 25, 2026

Integration Testing CI Test Failure on python 3.13 with prerelease dependencies

Status: Open.

#1127 In scverse/squidpy;

· scverse-bot opened on Feb 25, 2026

parallelize progress bar causes zombie processes and deadlocks

Status: Open.

#1123 In scverse/squidpy;

· selmanozleyen opened on Feb 23, 2026

pkg_resources not founded (deprecated since python 3.12)

Status: Open.

#1115 In scverse/squidpy;

· Reovirus opened on Feb 9, 2026

test_parallelize fails on local tests and is flaky

Status: Open.

#1111 In scverse/squidpy;

· selmanozleyen opened on Feb 2, 2026

Documentation for sq.gr.spatial_neighbors() likely needs more clarification about the interplay of arguments

Status: Open.

#1102 In scverse/squidpy;

· shashkat opened on Jan 25, 2026

Investigate why docutils<0.22 is needed.

Status: Open.

#1098 In scverse/squidpy;

· selmanozleyen opened on Jan 21, 2026

Consider having a _typing.py or a way to restructure common type aliases

Status: Open.

#1085 In scverse/squidpy;

· selmanozleyen opened on Dec 16, 2025