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--primer_set_version (5.3.2): Value is [string] but should be [number]

bugSomething isn't workingSomething isn't working

Status: Open.

#590 In nf-core/viralrecon;

· mpolemis opened on Mar 16, 2026

Add minimap2 and clair3 to nanopore workflow

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

Enhancement

#584 In nf-core/viralrecon;

· svarona opened on Mar 11, 2026

·  

Hackathon - March 2026

Adapt collapse_primer_bed.py for 7 column primer bed files

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#583 In nf-core/viralrecon;

· victor5lm opened on Mar 11, 2026

·  

Hackathon - March 2026

Improve artic model selection

bugSomething isn't workingSomething isn't working

Status: Open.

#582 In nf-core/viralrecon;

· victor5lm opened on Mar 11, 2026

·  

Hackathon - March 2026

Update cutadapt to take two separate primer files

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#581 In nf-core/viralrecon;

· AnnaNoren opened on Mar 11, 2026

·  

Hackathon - March 2026

Add the viralrecon official logo to the pipeline

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#577 In nf-core/viralrecon;

· svarona opened on Feb 13, 2026

·  

Hackathon - March 2026

Add de novo assembler for nanopore data

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

Enhancement

#573 In nf-core/viralrecon;

· svarona opened on Nov 25, 2025

·  

Hackathon - March 2026

Title: Support for Using Viralrecon with Other Arboviruses (e.g., Chikungunya and Dengue)

questionFurther information is requestedFurther information is requested

Status: Open.

#570 In nf-core/viralrecon;

· nascimento-jean opened on Nov 20, 2025

Unable to run viralrecon using custom FASTA, GFF and Primer BED file for nanopore data

bugSomething isn't workingSomething isn't working

Status: Open.

#568 In nf-core/viralrecon;

· Rohit-Satyam opened on Nov 19, 2025

Remove mandatory reference in de novo assembly

Status: Open.

#567 In nf-core/viralrecon;

· AnnaNoren opened on Nov 13, 2025

·  

Hackathon - March 2026

Add filtering step of blast results

Status: Open.

#566 In nf-core/viralrecon;

· AnnaNoren opened on Nov 13, 2025

·  

3.1

Add documentation

Status: Open.

#565 In nf-core/viralrecon;

· AnnaNoren opened on Nov 13, 2025

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3.1