classifiedRefiner fails to produce krona_refined.html

[danstrange]

Thanks a lot for working to get the classifiedRefiner module to function correctly. It seems to execute without issue now and successfully produces the classifications_refined.tsv and classifications_refined_report.tsv. However, it failed to produce the krona_refined.html as expected with --report option.

Here's the command and resulting process when running classfiedRefiner on my machine:

classifiedRefiner results/20260114/barcode13.trimmed/barcode13.trimmed_classifications.tsv metabuli_db/QMM-H_1.0_HI_251007 --threads 56 --remove-unclassified --exclude-taxid 7147 --report

Metabuli Version (commit): 22e7026
Remove unclassified reads true
Exclude taxId as well as its children 7147
Select taxId as well as its children
Select columns with number, (7:full lineage, generated if absent)
Make report of refined classification file true
Adjust classification to the specified rank
0: without higher rank, 1: with higher rank, 2: separate file for higher rank classification 0
Threads 56
Min. sequence similarity score 0

Loading nodes file ... Done, got 2703975 nodes
Loading merged file ... Done, added 93340 merged nodes.
Loading names file ... Done
Init computeSparseTable ...Done
Write refined classification results to:
results/20260114/barcode13.trimmed/barcode13.trimmed_classifications_refined.tsv
Write report to:
results/20260114/barcode13.trimmed/barcode13.trimmed_classifications_refined_report.tsv
Time for processing: 0h 0m 5s 887ms